miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|207402791|gb|FF356728.1|FF356728 CGATTTTTTTTTTTTTTTTTTGTAAAATCGTACACTAGGGCACAGTAGTACTCCCTCTGTAAAGAAATATAAGAGCGTTT
ATATCACTATATGAAGGGAGTATCTCCCTCACAATCGACAGGGAAAAAAAACATGTATACTAGGTGAAAAAAAACTAGTA
CTAACAATCATGTACGAGACTTGCGGATTTTCTCAAGTGCTTAGGGTCAAACGTCGAGGCCAACTACTCAAGCACATTGG
CTCCTCAGCTTCACATTTCAAATCTTTAATCACAGGGGGGTGATCAGTTGACCTGACCTAGTGCTTCCTTCTACTTGGTG
GCGGATCCCATGCCGCAGAGGGCGGCGGCGGCCTGGCGGGCGAAGTAGGTGAGGATGACGTCGGCGCCGGCTCGCCGCAG
GCACATGAGCGACTCCATCATCACCTTCTCCTCGTCGATCATGTTCAGCGCCCCGCCGGCCTTGATCATCGAGTACTCGC
CAGATACCTGGTATGCAGCAATTGGCAGTGCAGAATTATCCCGGAGAAGTCGGATGATATCCAAGTATGGCAATCCAGGT
TTCACTAGAAGGATATCAGCTCCTTCGGCCTCATCTGCTGCAGTTTCTAGAAGGGCTTCCCTGTAGTTAGCTGGGTTCAT
CTGATAGGTTTTCTTGTCCCCAAATCGTGGATTTGAATCTAAAGCTTCTCGGAATGGCCCATAAAATGAACTGGCGTACT
TTGCAGTATAGGACATGATGGAGACATCATTGAAACCCTCAGCATCCAAAGCAGAACGGATTGCTCCAACACGACCATCC
ATCATGTCA




Most similar to sp|Q42836|HEM2_HORVU

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q42836|HEM2_HORVU Delta-aminolevulinic acid dehydratase,
           chloroplastic OS=Hordeum vulgare GN=HEMB PE=2 SV=1
          Length = 428

 Score =  277 bits (708), Expect = 7e-74
 Identities = 143/163 (87%), Positives = 145/163 (88%)
 Frame = -2

Query: 808 DMMDGRVGAIRSALDAEGFNDVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPA 629
           +MMDGRVGAIRSALDAEGFNDVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPA
Sbjct: 265 NMMDGRVGAIRSALDAEGFNDVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPA 324

Query: 628 NYRXXXXXXXXXXXXXXDILLVKPGLPYLDIIRLLRDNSALPIAAYQVSGEYSMIKAGGA 449
           NYR              DILLVKPGLPYLDIIRL RDNSALPIAAYQVSGEYSMIKAGGA
Sbjct: 325 NYREALLETAADEAEGADILLVKPGLPYLDIIRLSRDNSALPIAAYQVSGEYSMIKAGGA 384

Query: 448 LNMIDEEKVMMESLMCLRRAGADVILTYFARQAAAALCGMGSA 320
           LNMIDEEKVMMESLMCLRRAGADVILTYFARQ  A LCGMG+A
Sbjct: 385 LNMIDEEKVMMESLMCLRRAGADVILTYFARQPPAVLCGMGTA 427